Glyma10g01620 - SoyBase

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Report for Sequence Feature Glyma10g01620

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1180874
stop:	1181680
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF00139	PFAM	Legume lectin domain	JGI		ISS
UniRef100_P05046	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lectin n=3 Tax=Glycine max RepID=LEC_SOYBN	SoyBase	E_val: 5.00E-78	ISS
UniRef100_UPI000233C348	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C348 related cluster n=1 Tax=unknown RepID=UPI000233C348	SoyBase	E_val: 2.00E-121	ISS

Proteins Associated with Glyma10g01620

Locus	Gene Symbol	Protein Name
	Le2-1	Lectin 2 gene 1

Expression Patterns of Glyma10g01620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01620

Paralog	Evidence	Comments
Glyma02g01590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g013100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g01620

Limit To All Plant Sequences

>Glyma10g01620.2   sequence type=CDS   gene model=Glyma10g01620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCTCCAAGTTCCATACCCAGAAGCCACTCTTTGTTGTTCTATCTGTCGTTGTGGTGCTACTCACCATGACCAAGGTAAACTCAACAAAACCGTTTCTATCACCTGGGACAAGTTCGTGCCGAACCAACCGAACGCTGATCCTCCAAGGAGACGCCCTTGTGACCTCATCGAGAAAGTCTCTTGGTCGCGCCCTCTACTCCACCCCTATCCACATTTGGGACAGCGAAATCGGCAGCGTTGCCAGCTTCGCCGCTTCCTTCAACTTCACTGTTTATGCGTCCGACATAGCAAATCTGGCAGATGGGCTTGCCTTCTTCCTCGCACCAATTGACACTCAGCCTCAGACACGCGGAGGGTATCTTGGTCTATACAACAATCCATCAAACTCGTCGTGGGGTTTAGCCAACGACCAAGTAACCAATGTTCTCATTACCTATGATGCCTCCACCAACCTCTTGGTTGCTTCTTTGGTTCATCCTTCGCAGAGAAGCAGCTATATCCTCTCCGATGTGCTCGATTTGAAGGTTGCTCTTCCCGAGTGGGTGAGGATAGGGTTCTCTGCTACCACCGGACTGAACGTAGCTTCGGAAACGCATGACGTGCATTCTTGGTCTTTTTCTTCCAATTTGCCATTCGGTAGCAGTAACACTAATCCTTCGGATTTTGCAATCTTTATCTAG

Predicted protein sequences of Glyma10g01620

Limit To All Plant Sequences

>Glyma10g01620.2   sequence type=predicted peptide   gene model=Glyma10g01620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSKFHTQKPLFVVLSVVVVLLTMTKVNSTKPFLSPGTSSCRTNRTLILQGDALVTSSRKSLGRALYSTPIHIWDSEIGSVASFAASFNFTVYASDIANLADGLAFFLAPIDTQPQTRGGYLGLYNNPSNSSWGLANDQVTNVLITYDASTNLLVASLVHPSQRSSYILSDVLDLKVALPEWVRIGFSATTGLNVASETHDVHSWSFSSNLPFGSSNTNPSDFAIFI*

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